![]() ![]() The first one is “Apply colors from current network view to associated Chimera models”: This one works fine, but it is not what I want. In cytoscape, I go to apps -> structureviz-> synchronize residue colors. My protein has three chains, and in chimera I color each differently. > What I am trying to do is colour the nodes in cytoscape based on which chain they belong to. > I use structureviz to open chimera through cytoscape and load an MD trajectory of a protein to create a RIN through Analysis -> Residue interaction network. ![]() Oracle Spatial and Graph supports Cytoscape 3.2 and above with two respective Cytoscape applications (plugins), one for visualizing property graphs and another for visualizing World Wide Web Consortium (W3C) Resource Description Framework (RDF) graphs stored in Oracle Database. > I am using Chimera 1.10.1 and Cytoscape 3.2.0, and have installed the structureViz2 plugin. Cytoscape is an open source graph visualization tool. On Feb 9, 2015, at 6:39 AM, Juan Eiros Zamora wrote: So unfortunately it will probably be a few days before we can offer any kind of usable fix for this. CYTOSCAPE 3.2 HOW TOOur Cytoscape expert (Scooter Morris) is out sick right now and I would need his assistance to determine how to fix the network information/nodes so that the Chimera->Cytoscape coloring works. It certainly does behave as you describe. I wanted to use the new feature of taxi edge style in 3.5.2, but everytime I render the graph the page freezes and crashes a.
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